species:   Scscl
pid:       PID1743
parent:    Ssc-milR-219
paralog:   
locus:     NW_001820835.1:1261928-1262022
matures:   ['UGUGGUAAUGGAGAGGGUGAAA', 'UCACCUUUCUAAUUGGUAUACA']
srr:       SRR12527897
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram NW_001820835.1:1261928-1262022

5 out of bounds
2 alignments
2 proper strand
2 stranded perfect matches

        ***********************                                  ***********************       
AGCGAUUAUAUGUGGUAAUGGAGAGGGUGAAACUAUACCACCAUUUUUAGUGGUGCAAGGACAAUAUCACCUUUCUAAUUGGUAUACAGAGAGUG
..........((((.(((((((((((.(((........(((((((...)))))))...........)))))))))).)))).)))).........
----------UGUGGUAAUGGAGAGGGUGAAA--------------------------------------------------------------- l=22 a=0 c
------------------------------------------------------------------UCACCUUUCUAAUUGGUAUACA------- l=22 a=0 c*
----------UGUGGUAAUGGAGAGGGUGAA---------------------------------------------------------------- l=21 a=1 ma
-------------------------------------------------------------------CACCUUUCUAAUUGGUAUACA------- l=21 a=0 ma*

----------UGUGGUAAUGGAGAGGGUGAA---------------------------------------------------------------- l=21 a=1 (ma)
-----UUAUAUGUGGUAAUGGAGAG---------------------------------------------------------------------- l=20 a=1 

mb-01011
ax-1011011
ku-01
ss-110111111100
fn-111
